Please use this identifier to cite or link to this item:
Title: Workflow para asociar segmentos de una secuencia genómica a una familia de proteínas de interés.
Author: Marín Nieto, Fátima
Director: Vegas Lozano, Esteban
Tutor: Sánchez Pla, Alexandre
Others: Universitat Oberta de Catalunya
Keywords: workflow
Issue Date: 2-Jan-2017
Publisher: Universitat Oberta de Catalunya
Abstract: The aim of the present work has been to create a workflow that allow to select segments of a microbial genome that they are possible candidates to belong to a functional family of proteins described in CAZy. The pipeline to carry out this aim has designed in 5 main phases: preparation of the database CAZy, recovery of sequences fasta of proteins of a functional family, analysis of homology for sequence by means of alineaments to pairs and multiple and search for functional pattern. For the realisation of the work have used multiple specific tools for each phase of analysis, and BLAST and HMMR3, and have established the optimum criteria that allowed to identify the regions of similitud in the seqüencia microbial genomics.
Language: Spanish
Appears in Collections:Bachelor thesis, research projects, etc.

Files in This Item:
File Description SizeFormat 
cazypredict_app.zip2.36 kBUnknownView/Open
cazypredict.zip6.63 MBUnknownView/Open
fmarinnTFM0117memoria.pdfmemoria2.03 MBAdobe PDFView/Open

This item is licensed under a Creative Commons License Creative Commons