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http://hdl.handle.net/10609/146604
Title: | Development of Node- RED web-based, open- source visual workflow tool for bioinformatics |
Author: | Fàbregas Carreté, Ferran |
Tutor: | Ortega-Carrasco, Elisabeth |
Others: | Perez-Navarro, Antoni |
Abstract: | Bioinformatics tools have become a key element in the current development of genomics, largely thanks to the involvement of public institutions, research centers, private companies, and individuals alike, which has led to the appearance of a large quantity and variety of applications. In this MTP, we developed a bioinformatics software for the visual design of genomic data workflows in a web environment based on Node-RED, incorporating functionalities related to genomics as the reading and writing of genomic data files, sequence management, treatment, and analysis, with the aim of designing an open, flexible, and interdisciplinary tool with a moderate learning curve that takes advantage of the native functionalities of the Node-RED platform and, above all, is useful not only for the bioinformatics community but also for the educational community too. For this reason, not only the main software tool has been developed, but also a set of utilities has been published, such as an issue management platform, a mailing list with an open forum, the publication of the source code as open-source, and the packaged software itself, in addition to its corresponding documentation. In conclusion, we endeavored to provide the bioinformatics community with a new useful integrative tool that provides a new approach, both at a technical and conceptual level, thanks to its innovative architecture, the implementation of workflows, the simplicity of use, and its integration with other non-bioinformatics services, with the addition of to be an open-source-based tool, thus allowing its constant evolution by any member of the bioinformatics community. |
Keywords: | Javascript workflow visual toolkit |
Document type: | info:eu-repo/semantics/masterThesis |
Issue Date: | 2-Jun-2022 |
Publication license: | http://creativecommons.org/licenses/by-nc/3.0/es/ |
Appears in Collections: | Trabajos finales de carrera, trabajos de investigación, etc. |
Files in This Item:
File | Description | Size | Format | |
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ffabregasFMDP0622report.pdf | Report of TFM | 2,26 MB | Adobe PDF | View/Open |
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