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http://hdl.handle.net/10609/81973
Title: | Desarrollo y optimización de un pipeline para el análisis dual del transcriptoma planta/patógeno: identificando los mecanismos de patogenicidad y defensa |
Author: | Martín García, Jorge |
Tutor: | Ylla Bou, Guillem |
Others: | Universitat Oberta de Catalunya Merino, David |
Abstract: | The present Master's Thesis is focused on the dual host/pathogen transcriptomic analyses for the Eucalyptus grandis/ Chrysoporthe austroafricana pathosystem, testing the host genetic resistant and the effect of the pathogen infection. A pipeline and its script were developed for downloading and pre-processing of sequences, and subsequent RNA-seq analysis. Computational requirement and the importance of a proper number of biological replicates are discussed. In host, gene expression is determined by host resistant genetic and infectious disease process. The functional enrichment analyses improved the knowledge on biological process involved in the response mechanisms in plant as a result of the pathogen infection for this pathosystem. |
Keywords: | gene expression RNA-seq pathogenicity |
Document type: | info:eu-repo/semantics/masterThesis |
Issue Date: | 5-Jun-2018 |
Publication license: | http://creativecommons.org/licenses/by-nc/3.0/es/ |
Appears in Collections: | Trabajos finales de carrera, trabajos de investigación, etc. |
Files in This Item:
File | Description | Size | Format | |
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jmartingarcia5TFM0618memoria.pdf | Memoria del TFM | 3,04 MB | Adobe PDF | View/Open |
jmartingarcia5TFM0618presentación.pdf | Presentación del TFM | 2,77 MB | Adobe PDF | View/Open |
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